Sotabase

Career

· Postdoctoral Researcher, Massachusetts Institute of Technology2023–
· Degree Candidate, Stanford University2023–
· Graduate Student, Stanford University
· Ph.D. Student, Computer Science, Stanford University
· Research Assistant, Stanford University

Publications (33)

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Nature Biotechnology · 2019
10,490
cited
Structure of the μ Opioid Receptor-Gi Protein Complex
Nature · 2018
568
cited
The Art and Science of Molecular Docking.
Annual Review of Biochemistry · 2024
230
cited
Mu Opioid Receptor-Gi Protein Complex
2018
137
cited
Structural and functional characterization of G protein–coupled receptors with deep mutational scanning
bioRxiv · 2019
119
cited
Structural basis for channel conduction in the pump-like channelrhodopsin ChRmine
Cell · 2021
105
cited
Crystal structure of the natural anion-conducting channelrhodopsin GtACR1
Nature · 2018
91
cited
Insights into distinct signaling profiles of the µOR activated by diverse agonists
Nature Chemical Biology · 2022
90
cited
Structural mechanisms of selectivity and gating in anion channelrhodopsins
Nature · 2018
76
cited
A sequence-based, deep learning model accurately predicts RNA splicing branchpoints
bioRxiv · 2017
73
cited
Molecular mechanism of biased signaling at the kappa opioid receptor
Nature Communications · 2023
70
cited
S-CAP extends pathogenicity prediction to genetic variants that affect RNA splicing
Nature Genetics · 2019
52
cited
Geometric Deep Learning for Structure-Based Ligand Design
ACS Central Science · 2023
47
cited
Structural basis for ion selectivity in potassium-selective channelrhodopsins
Cell · 2022
35
cited
Identification of new branch points and unconventional introns in Saccharomyces cerevisiae
RNA: A publication of the RNA Society · 2016
34
cited
Leveraging nonstructural data to predict structures and affinities of protein–ligand complexes
Proceedings of the National Academy of Sciences of the United States of America · 2021
25
cited
Numerous recursive sites contribute to accuracy of splicing in long introns in flies
PLoS Genetics · 2018
21
cited
HISAT-genotype: Next Generation Genomic Analysis Platform on a Personal Computer
bioRxiv · 2018
17
cited
A non-canonical mechanism of GPCR activation
Nature Communications · 2024
11
cited
Predicting Transcriptional Regulatory Activities with Deep Convolutional Networks
bioRxiv · 2017
6
cited
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Joe Paggi | Researcher Profile | Sotabase | Sotabase