Sotabase

Career

· Cheriton Family Professor of Computer Science, Stanford University2014–
· Senior Research Scientist and Special Advisor to the Chairman, D. E. Shaw Research2002–2014
· Lead Artificial Intelligence Engineer, Arch Healthcare2001–2002
· Ph.D. in Electrical Engineering and Computer Science, Massachusetts Institute of Technology1998–2002
· M.Phil. in Biological Sciences (Churchill Scholar), University of Cambridge1997–1998
· B.S. in Electrical Engineering and B.A. in Mathematics, Rice University1993–1997

Publications (457)

Improved side-chain torsion potentials for the Amber ff99SB protein force field
Proteins: Structure, Function, and Bioinformatics · 2010
5,515
cited
Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters
International Conference on Software Composition · 2006
3,413
cited
Molecular Dynamics Simulation for All
Neuron · 2018
2,259
cited
How Fast-Folding Proteins Fold
Science · 2011
1,845
cited
Supporting Online Material Materials and Methods Figs. S1 to S10 Table S1 References Movies S1 to S3 Atomic-level Characterization of the Structural Dynamics of Proteins
1,265
cited
Biomolecular simulation: a computational microscope for molecular biology.
Annual Review of Biophysics · 2012
1,077
cited
Structural insights into μ-opioid receptor activation
Nature · 2015
799
cited
Structure and Dynamics of the M3 Muscarinic Acetylcholine Receptor
Nature · 2012
778
cited
Structure and Function of an Irreversible Agonist-β2 Adrenoceptor complex
Nature · 2010
763
cited
The Dynamic Process of β2-Adrenergic Receptor Activation
Cell · 2013
748
cited
Long-timescale molecular dynamics simulations of protein structure and function.
Current Opinion in Structural Biology · 2009
733
cited
Pathway and mechanism of drug binding to G-protein-coupled receptors
Proceedings of the National Academy of Sciences of the United States of America · 2011
703
cited
GPCR Dynamics: Structures in Motion.
Chemical Reviews · 2017
673
cited
Systematic Validation of Protein Force Fields against Experimental Data
PLoS ONE · 2012
646
cited
Learning from Protein Structure with Geometric Vector Perceptrons
International Conference on Learning Representations · 2020
595
cited
How does a drug molecule find its target binding site?
Journal of the American Chemical Society · 2011
581
cited
Activation mechanism of the β2-adrenergic receptor
Proceedings of the National Academy of Sciences of the United States of America · 2011
577
cited
Anton, a special-purpose machine for molecular dynamics simulation
CACM · 2008
574
cited
Structure of the μ Opioid Receptor-Gi Protein Complex
Nature · 2018
569
cited
Mechanism of Voltage Gating in Potassium Channels
Science · 2012
552
cited
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