Sotabase

Career

· Professor, University of California, Berkeley2008–
· Bachelor of Science - BS, Mathematics, Massachusetts Institute of Technology
· Bachelor of Science - BS, Physics, Massachusetts Institute of Technology
· Doctor of Philosophy - PhD, Physics, Stanford University

Publications (183)

Genotype and SNP calling from next-generation sequencing data
Nature reviews genetics · 2011
1,425
cited
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations
Nature · 2016
1,344
cited
Evaluating Protein Transfer Learning with TAPE
bioRxiv · 2019
937
cited
Robust and scalable inference of population history from hundreds of unphased whole genomes
Nature Genetics · 2016
742
cited
Genomic evidence for the Pleistocene and recent population history of Native Americans
Science · 2015
489
cited
Genomic Variation in Natural Populations of Drosophila melanogaster
Genetics · 2012
335
cited
Loci associated with skin pigmentation identified in African populations
Science · 2017
320
cited
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans
Nature · 2018
308
cited
Early human dispersals within the Americas
Science · 2018
275
cited
Genome-Wide Fine-Scale Recombination Rate Variation in Drosophila melanogaster
PLoS Genetics · 2012
260
cited
Deep Learning for Population Genetic Inference
bioRxiv · 2015
231
cited
Estimating Variable Effective Population Sizes from Multiple Genomes: A Sequentially Markov Conditional Sampling Distribution Approach
Genetics · 2013
199
cited
Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19
Science Translational Medicine · 2021
198
cited
The Hitchhiking Effect on Linkage Disequilibrium Between Linked Neutral Loci
Genetics · 2006
167
cited
Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria
Science Advances · 2019
152
cited
Inference and analysis of population-specific fine-scale recombination maps across 26 diverse human populations
Science Advances · 2019
148
cited
Efficiently inferring the demographic history of many populations with allele count data
bioRxiv · 2018
139
cited
ECHO: a reference-free short-read error correction algorithm.
Genome Research · 2011
126
cited
DNA language models are powerful predictors of genome-wide variant effects
bioRxiv · 2023
125
cited
A Likelihood-Free Inference Framework for Population Genetic Data using Exchangeable Neural Networks
bioRxiv · 2018
121
cited
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