Sotabase

Career

· PhD Student, UC Berkeley, EECS Department2024–

Publications (57)

STAT3 tyrosine phosphorylation is critical for interleukin 1 beta and interleukin-6 production in response to lipopolysaccharide and live bacteria.
Molecular Immunology · 2009
254
cited
TLR4-Mediated AKT Activation Is MyD88/TRIF Dependent and Critical for Induction of Oxidative Phosphorylation and Mitochondrial Transcription Factor A in Murine Macrophages
Journal of Immunology · 2012
115
cited
Modulation of Macrophage Functional Polarity towards Anti-Inflammatory Phenotype with Plasmid DNA Delivery in CD44 Targeting Hyaluronic Acid Nanoparticles
Scientific Reports · 2015
113
cited
Personal transcriptome variation is poorly explained by current genomic deep learning models
bioRxiv · 2023
88
cited
Dysregulation of p38 and MKP-1 in response to NOD1/TLR4 stimulation in sarcoid bronchoalveolar cells.
American Journal of Respiratory and Critical Care Medicine · 2011
67
cited
Vaccination with Leishmania Hemoglobin Receptor–Encoding DNA Protects Against Visceral Leishmaniasis
Science Translational Medicine · 2013
65
cited
Cross-protein transfer learning substantially improves disease variant prediction
bioRxiv · 2023
51
cited
Salmonella Acquires Lysosome-associated Membrane Protein 1 (LAMP1) on Phagosomes from Golgi via SipC Protein-mediated Recruitment of Host Syntaxin6*
Journal of Biological Chemistry · 2011
49
cited
Rapamycin Induces Mitogen-activated Protein (MAP) Kinase Phosphatase-1 (MKP-1) Expression through Activation of Protein Kinase B and Mitogen-activated Protein Kinase Kinase Pathways*
Journal of Biological Chemistry · 2013
47
cited
Leishmania donovani resides in modified early endosomes by upregulating Rab5a expression via the downregulation of miR-494
PLoS Pathogens · 2017
41
cited
Clathrin-mediated hemoglobin endocytosis is essential for survival of Leishmania.
Biochimica et Biophysica Acta · 2013
35
cited
Dual Inhibition of Rip2 and IRAK1/4 Regulates IL-1β and IL-6 in Sarcoidosis Alveolar Macrophages and Peripheral Blood Mononuclear Cells
Journal of Immunology · 2016
35
cited
Rab5 Isoforms Specifically Regulate Different Modes of Endocytosis in Leishmania*
Journal of Biological Chemistry · 2016
25
cited
Comparative accuracy of CT, dual-echo MRI and MR spectroscopy for preoperative liver fat quantification in living related liver donors
Indian Journal of Radiology and Imaging · 2016
22
cited
Phase-Transition Mastering of High-Density Optical Media
2007
21
cited
Critical assessment of missense variant effect predictors on disease-relevant variant data
bioRxiv · 2024
17
cited
Fine-tuning sequence-to-expression models on personal genome and transcriptome data
bioRxiv · 2024
17
cited
Multi-Antigenic Virus-like Particle of SARS CoV-2 produced in Saccharomyces cerevisiae as a vaccine candidate
bioRxiv · 2020
17
cited
Ambient pressure upregulates nitric oxide synthase in a phosphorylated-extracellular regulated kinase- and protein kinase C-dependent manner.
Journal of Vascular Surgery · 2006
16
cited
PRAK-03202: A triple antigen virus-like particle vaccine candidate against SARS CoV-2
Heliyon · 2021
14
cited
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Ruchir Rastogi | Researcher Profile | Sotabase | Sotabase