Sotabase

Career

· Associate Professor of Genetics and Computer Science, Stanford University2013–
· Masters in Electrical Engineering, Columbia University2001–2002
· Research Assistant, Columbia University1997–2001
· Bachelor of Engineering (Electrical), Veermata Jijabai Technological Institute (V. J. T. I.), Mumbai University1997–2001

Publications (692)

Integrative analysis of 111 reference human epigenomes
Nature · 2015
5,895
cited
Learning Important Features Through Propagating Activation Differences
International Conference on Machine Learning · 2017
4,391
cited
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
Nature Methods · 2017
2,003
cited
Opportunities and obstacles for deep learning in biology and medicine
bioRxiv · 2017
1,921
cited
Expanded encyclopaedias of DNA elements in the human and mouse genomes
Nature · 2020
1,751
cited
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Genome Research · 2012
1,737
cited
WILDS: A Benchmark of in-the-Wild Distribution Shifts
International Conference on Machine Learning · 2020
1,674
cited
A comparative encyclopedia of DNA elements in the mouse genome
Nature · 2014
1,580
cited
Architecture of the human regulatory network derived from ENCODE data
Nature · 2012
1,482
cited
The ENCODE Blacklist: Identification of Problematic Regions of the Genome
Scientific Reports · 2019
1,426
cited
A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
PLoS Biology · 2011
1,069
cited
Lineage-specific and single cell chromatin accessibility charts human hematopoiesis and leukemia evolution
Nature Genetics · 2016
999
cited
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
Genome Research · 2012
864
cited
Not Just a Black Box: Learning Important Features Through Propagating Activation Differences
arXiv.org · 2016
854
cited
Opportunities and challenges for transcriptome-wide association studies
Nature Genetics · 2019
706
cited
Defining functional DNA elements in the human genome
Proceedings of the National Academy of Sciences of the United States of America · 2014
676
cited
Linking disease associations with regulatory information in the human genome
Genome Research · 2012
675
cited
Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers
Nature Genetics · 2015
649
cited
Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease
Nature · 2015
539
cited
Base-resolution models of transcription factor binding reveal soft motif syntax
Nature Genetics · 2019
500
cited
Sotabase