Sotabase

Career

· Postdoctoral Researcher, Massachusetts Institute of Technology2025–
· Researcher, Palo Alto Networks2025–
· PhD in Computer Science, University of Illinois at Urbana-Champaign2019–2025
· PhD in Computer Science, Brown University2017–2025
· Bachelor of Science in Computer Science, University of California, Berkeley2017–
· Machine Learning Consultant, Applied LLMs
· Intern, Intel Corporation
· Translational biology scientist and manager, Metagenomi
· Undergraduate Student, University of California, Berkeley

Publications (0)

Language models enable zero-shot prediction of the effects of mutations on protein function
bioRxiv · 2021
742
cited
Experimental evaluation of wireless simulation assumptions
International Conference on Modeling, Analysis and Simulation of Wireless and Mobile Systems · 2004
685
cited
MSA Transformer
bioRxiv · 2021
659
cited
Learning inverse folding from millions of predicted structures
bioRxiv · 2022
515
cited
Bone tissue engineering via nanostructured calcium phosphate biomaterials and stem cells
Bone Research · 2014
319
cited
Outdoor experimental comparison of four ad hoc routing algorithms
International Conference on Modeling, Analysis and Simulation of Wireless and Mobile Systems · 2004
191
cited
An integrative ENCODE resource for cancer genomics
Nature Communications · 2019
144
cited
Perspectives on ENCODE
Nature · 2020
142
cited
Driving Cache Replacement with ML-based LeCaR
USENIX Workshop on Hot Topics in Storage and File Systems · 2018
134
cited
TypeWriter: neural type prediction with search-based validation
ESEC/SIGSOFT FSE · 2019
132
cited
Towards Realistic Million-Node Internet Simulation
International Conference on Parallel and Distributed Processing Techniques and Applications · 1999
114
cited
RINSE: The Real-Time Immersive Network Simulation Environment for Network Security Exercises (Extended Version)
Workshop on Parallel and Distributed Simulation · 2005
112
cited
Simulation validation using direct execution of wireless ad-hoc routing protocols
18th Workshop on Parallel and Distributed Simulation, 2004. PADS 2004. · 2004
83
cited
Joint Host-Network Optimization for Energy-Efficient Data Center Networking
2013 IEEE 27th International Symposium on Parallel and Distributed Processing · 2013
80
cited
Composite Synchronization in Parallel Discrete-Event Simulation
IEEE Trans. Parallel Distributed Syst. · 2002
73
cited
Simulation Modeling of Large-Scale Ad-hoc Sensor Networks
2001
69
cited
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
Cell · 2022
63
cited
Grounding Complex Natural Language Commands for Temporal Tasks in Unseen Environments
Conference on Robot Learning · 2023
58
cited
Performance prediction of a parallel simulator
Proceedings Thirteenth Workshop on Parallel and Distributed Simulation. PADS 99. (Cat. No.PR00155) · 1999
51
cited
SVEET! a scalable virtualized evaluation environment for TCP
2009 5th International Conference on Testbeds and Research Infrastructures for the Development of Networks & Communities and Workshops · 2009
51
cited
Sotabase