Sotabase

Career

· Associate Professor, Princeton University2003–2013
· Professor, Princeton University2003–
· Graduate Student, Stanford University Medical Center1999–2003
· Doctor of Philosophy (Ph.D.), Biomedical Informatics, Stanford University School of Medicine1995–1999
· Bachelor of Science (B.S.), Computer Science and Biology, University of Richmond1995–1999

Publications (498)

Missing value estimation methods for DNA microarrays
Bioinform. · 2001
4,161
cited
The Genetic Landscape of a Cell
Science · 2010
2,163
cited
Predicting effects of noncoding variants with deep learning–based sequence model
Nature Methods · 2015
2,041
cited
Diversity of gene expression in adenocarcinoma of the lung
Proceedings of the National Academy of Sciences of the United States of America · 2001
1,335
cited
A global genetic interaction network maps a wiring diagram of cellular function
Science · 2016
1,105
cited
Understanding multicellular function and disease with human tissue-specific networks
Nature Genetics · 2015
796
cited
Endothelial cell diversity revealed by global expression profiling
Proceedings of the National Academy of Sciences of the United States of America · 2003
780
cited
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry
Proceedings of the National Academy of Sciences of the United States of America · 2007
588
cited
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae)
Proceedings of the National Academy of Sciences of the United States of America · 2003
584
cited
Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast.
Molecular Biology of the Cell · 2008
583
cited
Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk
Nature Genetics · 2018
516
cited
Systemic and cell type-specific gene expression patterns in scleroderma skin
Proceedings of the National Academy of Sciences of the United States of America · 2003
420
cited
New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.
Nature Genetics · 2018
405
cited
SynNotch-CAR T cells overcome challenges of specificity, heterogeneity, and persistence in treating glioblastoma
Science Translational Medicine · 2021
384
cited
Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder
Nature Neuroscience · 2016
381
cited
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale
Nature Methods · 2010
365
cited
Nonparametric methods for identifying differentially expressed genes in microarray data
Bioinform. · 2002
352
cited
Gene expression patterns in ovarian carcinomas.
Molecular Biology of the Cell · 2003
337
cited
Variation in gene expression patterns in human gastric cancers.
Molecular Biology of the Cell · 2003
324
cited
Systems-level dynamic analyses of fate change in murine embryonic stem cells
Nature · 2009
303
cited
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