Sotabase

Career

· Researcher, Stanford University2024–
· Doctor of Philosophy - PhD in Chemistry and Chemical Engineering, EPFL (École polytechnique fédérale de Lausanne)2012–2017
· Aqemia
· Research Scientist, Qubit Pharmaceuticals
· Postdoctoral Researcher, Stanford University
· Utrecht University

Publications (18)

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
Proteins: Structure, Function, and Bioinformatics · 2021
103
cited
A positively tuned voltage indicator for extended electrical recordings in the brain
Nature Methods · 2023
60
cited
Does Proton Conduction in the Voltage-Gated H+ Channel hHv1 Involve Grotthuss-Like Hopping via Acidic Residues?
Journal of Physical Chemistry B · 2017
31
cited
Implications of short time scale dynamics on long time processes
Structural Dynamics · 2017
25
cited
Structure of a GRK5-Calmodulin Complex Reveals Molecular Mechanism of GRK Activation and Substrate Targeting.
Molecules and Cells · 2020
25
cited
Cyclization and Docking Protocol for Cyclic Peptide–Protein Modeling Using HADDOCK2.4
Journal of Chemical Theory and Computation · 2022
23
cited
Effect of N-Terminal Myristoylation on the Active Conformation of Gαi1-GTP.
Biochemistry · 2017
21
cited
How Rhodopsin Tunes the Equilibrium between Protonated and Deprotonated Forms of the Retinal Chromophore.
Journal of Chemical Theory and Computation · 2017
10
cited
Interface Refinement of Low-to-Medium Resolution Cryo-EM Complexes using HADDOCK2.4
bioRxiv · 2021
9
cited
Association of Both Inhibitory and Stimulatory Gα Subunits Implies Adenylyl Cyclase 5 Deactivation.
Biochemistry · 2019
8
cited
Multiscale molecular simulations to investigate adenylyl cyclase‐based signaling in the brain
WIREs Computational Molecular Science · 2022
7
cited
A positively Tuned Voltage Indicator Reveals Electrical Correlates of Calcium Activity in the Brain
bioRxiv · 2021
6
cited
Gαi1 inhibition mechanism of ATP-bound adenylyl cyclase type 5
PLoS ONE · 2021
6
cited
Integrative modeling in the age of machine learning: a summary of HADDOCK strategies in CAPRI rounds 47-55
bioRxiv · 2024
2
cited
Thriving in the heat – Lysine acetylation stabilizes the quaternary structure of a Mega-Dalton hyperthermoactive PEP-synthase
bioRxiv · 2022
1
cited
A Cyclisation and Docking Protocol for Cyclic Peptide-Protein Modelling using HADDOCK2.4
bioRxiv · 2022
Cover Image, Volume 13, Issue 1
WIREs Computational Molecular Science · 2023
Improving the Quality of Co-evolution Intermolecular Contact Prediction with DisVis
bioRxiv · 2022
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Siri Camee van Keulen | Researcher Profile | Sotabase | Sotabase