Sotabase

Career

· Associate Professor of Neurology and Bioengineering, University of California, San Francisco2025–
· Researcher/Graduate Student, UC Berkeley-UCSF Graduate Program in Bioengineering2019–
· PhD Student in Electrical Engineering and Computer Sciences, UC Berkeley2013–2018

Publications (29)

Definitions, methods, and applications in interpretable machine learning
Proceedings of the National Academy of Sciences of the United States of America · 2019
1,642
cited
Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex
Neuron · 2019
251
cited
Superficial Bound of the Depth Limit of Two-Photon Imaging in Mouse Brain
eNeuro · 2019
73
cited
Visual physiology of the layer 4 cortical circuit in silico
bioRxiv · 2018
72
cited
Structural Compression of Convolutional Neural Networks Based on Greedy Filter Pruning
arXiv.org · 2017
58
cited
The DeepTune framework for modeling and characterizing neurons in visual cortex area V4
bioRxiv · 2018
35
cited
Interpreting Convolutional Neural Networks Through Compression
arXiv.org · 2017
25
cited
Brain-Computer Interface in Virtual Reality
International IEEE/EMBS Conference on Neural Engineering · 2018
19
cited
Structural Compression of Convolutional Neural Networks with Applications in Interpretability
Frontiers in Big Data · 2017
19
cited
Estimation of Muscle Force with EMG Signals Using Hammerstein-Wiener Model
2011
16
cited
Multi-Modal Prototype Learning for Interpretable Multivariable Time Series Classification
arXiv.org · 2021
12
cited
Automatic B-spline image registration using histogram-based landmark extraction
IEEE-EMBS Conference on Biomedical Engineering and Sciences · 2012
10
cited
A new method for estimating the longevity and degradation of photovoltaic systems considering weather states
2016
7
cited
Do retinal ganglion cells project natural scenes to their principal subspace and whiten them?
Asilomar Conference on Signals, Systems and Computers · 2016
4
cited
Machine Learning for Uncovering Biological Insights in Spatial Transcriptomics Data
arXiv.org · 2023
4
cited
Compression-enabled interpretability of voxelwise encoding models
bioRxiv · 2023
3
cited
MMRO: A Feature Selection Criterion for MR Images Based on Alpha Stable Filter Responses
Iranian Conference on Machine Vision and Image Processing · 2011
3
cited
Assessing biomedical knowledge robustness in large language models by query-efficient sampling attacks
Trans. Mach. Learn. Res. · 2024
2
cited
Unsupervised pattern discovery in spatial gene expression atlas reveals mouse brain regions beyond established ontology
bioRxiv · 2023
2
cited
3-Photon Calcium Imaging of Deep Cortical Layers for Functional Connectomics
Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA,BRAIN,NTM,OMA,OMP) · 2019
1
cited
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Reza Abbasi-Asl | Researcher Profile | Sotabase | Sotabase