Sotabase

Career

· Associate Professor (Tenured) in Machine Learning, Aalto University2009–
· M.Sc. in Applied Mathematics, University of Helsinki2004–
· Ph.D. in Statistics, University of Helsinki2004–2008

Publications (56)

A Survey on Knowledge Graphs: Representation, Acquisition, and Applications
IEEE Transactions on Neural Networks and Learning Systems · 2020
2,472
cited
Bayesian identification of admixture events using multilocus molecular markers
Molecular Ecology · 2006
656
cited
BAPS 2: enhanced possibilities for the analysis of genetic population structure
Bioinform. · 2004
473
cited
Dense genomic sampling identifies highways of pneumococcal recombination
Nature Genetics · 2014
381
cited
Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes
PLoS Genetics · 2014
213
cited
Detection of recombination events in bacterial genomes from large population samples
Nucleic Acids Research · 2011
200
cited
International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact
EBioMedicine · 2019
195
cited
Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes
Nature Communications · 2016
182
cited
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis
Nature Communications · 2016
177
cited
Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations
bioRxiv · 2016
151
cited
Cryptic ecology among host generalist Campylobacter jejuni in domestic animals
Molecular Ecology · 2014
147
cited
metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis
bioRxiv · 2015
123
cited
Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus
Genome Biology · 2012
107
cited
Kernel Language Entropy: Fine-grained Uncertainty Quantification for LLMs from Semantic Similarities
Neural Information Processing Systems · 2024
99
cited
Bioinformatics Original Paper Bayesian Search of Functionally Divergent Protein Subgroups and Their Function Specific Residues
50
cited
Reconstructing population histories from single nucleotide polymorphism data.
Molecular biology and evolution · 2011
49
cited
Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila
PLoS Genetics · 2017
46
cited
Recombination produces coherent bacterial species clusters in both core and accessory genomes
Microbial Genomics · 2015
45
cited
Modelling G×E with historical weather information improves genomic prediction in new environments
bioRxiv · 2017
41
cited
Assessing multivariate gene-metabolome associations with rare variants using Bayesian reduced rank regression
Bioinform. · 2014
35
cited
Sotabase