Sotabase

Career

· Director, HIIT2026–2030
· Professor, Aalto University2012–
· Professor, University of Helsinki2005–2011
· Marie Curie Fellow, Royal Holloway, University of London2003–2005
· Doctoral Degree in Computer Science, University of Helsinki2001–
· Researcher, VTT Technical Research Centre of Finland

Publications (145)

SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information
Nature Methods · 2019
1,438
cited
Searching molecular structure databases with tandem mass spectra using CSI:FingerID
Proceedings of the National Academy of Sciences of the United States of America · 2015
923
cited
Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra
Nature Biotechnology · 2020
575
cited
Kernel-Based Learning of Hierarchical Multilabel Classification Models
Journal of machine learning research · 2006
305
cited
General and Efficient Multisplitting of Numerical Attributes
Machine-mediated learning · 1999
165
cited
Critical Assessment of Small Molecule Identification 2016: automated methods
Journal of Cheminformatics · 2017
163
cited
Metabolite identification and molecular fingerprint prediction through machine learning
Bioinform. · 2012
162
cited
FiD: a software for ab initio structural identification of product ions from tandem mass spectrometric data.
Rapid Communications in Mass Spectrometry · 2008
135
cited
Meat Processing Plant Microbiome and Contamination Patterns of Cold-Tolerant Bacteria Causing Food Safety and Spoilage Risks in the Manufacture of Vacuum-Packaged Cooked Sausages
Applied and Environmental Microbiology · 2015
134
cited
metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis
bioRxiv · 2015
123
cited
A Tutorial on Canonical Correlation Methods
ACM Computing Surveys · 2017
119
cited
Non-Stationary Gaussian Process Regression with Hamiltonian Monte Carlo
International Conference on Artificial Intelligence and Statistics · 2015
116
cited
Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species
PLoS Comput. Biol. · 2014
113
cited
Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors
PLoS Comput. Biol. · 2017
109
cited
Learning hierarchical multi-category text classification models
International Conference on Machine Learning · 2005
109
cited
Metabolite identification through multiple kernel learning on fragmentation trees
Bioinform. · 2014
107
cited
Leveraging multi-way interactions for systematic prediction of pre-clinical drug combination effects
Nature Communications · 2020
100
cited
Fast metabolite identification with Input Output Kernel Regression
Bioinform. · 2016
85
cited
Learning with multiple pairwise kernels for drug bioactivity prediction
Bioinform. · 2018
75
cited
Multi-view kernel completion
Machine-mediated learning · 2016
58
cited
Sotabase
Juho Rousu | Researcher Profile | Sotabase | Sotabase