Sotabase

Career

· Professor, University of Massachusetts Medical School2024–
· Master of Science - MS Electrical Engineering, Columbia University
· Founder, Experience Lab
· The Johns Hopkins University
· Bachelor of Science - BS Mathematics, University of Washington

Publications (137)

Towards Answering Opinion Questions: Separating Facts from Opinions and Identifying the Polarity of Opinion Sentences
Conference on Empirical Methods in Natural Language Processing · 2003
1,263
cited
Genomic variation in 3,010 diverse accessions of Asian cultivated rice
Nature · 2018
1,220
cited
GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles
Intelligent Systems in Molecular Biology · 2001
583
cited
Trial of Sodium Phenylbutyrate-Taurursodiol for Amyotrophic Lateral Sclerosis.
New England Journal of Medicine · 2020
359
cited
Human Immunodeficiency Virus Type 1 Recombination: Rate, Fidelity, and Putative Hot Spots
Journal of Virology · 2002
296
cited
Identification and Characterization of Novel Mammalian Neuropeptide FF-like Peptides That Attenuate Morphine-induced Antinociception*
Journal of Biological Chemistry · 2001
268
cited
Automatic Extraction of Opinion Propositions and their Holders
2004
224
cited
Safety and efficacy of ceftriaxone for amyotrophic lateral sclerosis: a multi-stage, randomised, double-blind, placebo-controlled trial
Lancet Neurology · 2014
187
cited
Mapping abbreviations to full forms in biomedical articles.
JAMIA Journal of the American Medical Informatics Association · 2002
164
cited
A Conformation-Dependent Neutralizing Monoclonal Antibody Specifically Targeting Receptor-Binding Domain in Middle East Respiratory Syndrome Coronavirus Spike Protein
Journal of Virology · 2014
144
cited
In silico design of a DNA-based HIV-1 multi-epitope vaccine for Chinese populations
Human Vaccines & Immunotherapeutics · 2015
135
cited
Long‐term survival of participants in the CENTAUR trial of sodium phenylbutyrate‐taurursodiol in amyotrophic lateral sclerosis
Muscle and Nerve · 2020
135
cited
Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines
Nature Neuroscience · 2020
124
cited
Beyond Information Retrieval - Medical Question Answering
American Medical Informatics Association Annual Symposium · 2006
122
cited
Chlamydia muridarum T-Cell Antigens Formulated with the Adjuvant DDA/TDB Induce Immunity against Infection That Correlates with a High Frequency of Gamma Interferon (IFN-γ)/Tumor Necrosis Factor Alpha and IFN-γ/Interleukin-17 Double-Positive CD4+ T Cells
Infection and Immunity · 2010
106
cited
Mutational Analysis of HIV-1 Long Terminal Repeats to Explore the Relative Contribution of Reverse Transcriptase and RNA Polymerase II to Viral Mutagenesis*
Journal of Biological Chemistry · 2002
102
cited
Spontaneous and Controllable Activation of Suicide Gene Expression Driven by the Stress-Inducible Grp78 Promoter Resulting in Eradication of Sizable Human Tumors
Human Gene Therapy · 2004
92
cited
Characterization of Murine Dendritic Cell Line JAWS II and Primary Bone Marrow-Derived Dendritic Cells in Chlamydia muridarum Antigen Presentation and Induction of Protective Immunity
Infection and Immunity · 2008
86
cited
Modulation of HBV replication by microRNA-15b through targeting hepatocyte nuclear factor 1α
Nucleic Acids Research · 2014
81
cited
Multi-Organ Damage in Human Dipeptidyl Peptidase 4 Transgenic Mice Infected with Middle East Respiratory Syndrome-Coronavirus
PLoS ONE · 2015
81
cited
Sotabase