Sotabase

Career

· Director, UC Berkeley2022–
· Associate Professor, UC Berkeley2016–
· Assistant Professor, UC Berkeley2009–2016
· NSF Post-doctoral Fellow in Biological Informatics, UC Berkeley2007–2009
· Post-Doctoral Scholar, Mathematical Sciences Research Institute2006–2007
· Ph.D., Statistics, Stanford University2001–2006
· B.S. Applied Mathematics and History, Yale University1996–2000

Publications (78)

Diversity of the Human Intestinal Microbial Flora
Science · 2005
7,818
cited
Integrated Genomic Analyses of Ovarian Carcinoma
Nature · 2011
7,365
cited
Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1.
Cancer Cell · 2010
6,988
cited
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
Nature · 2008
6,903
cited
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
BMC Genomics · 2017
2,312
cited
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
BMC Bioinformatics · 2010
1,751
cited
Molecular analysis of the bacterial microbiota in the human stomach.
Proceedings of the National Academy of Sciences of the United States of America · 2006
1,091
cited
Drought and host selection influence bacterial community dynamics in the grass root microbiome
The ISME Journal · 2017
496
cited
Subtype and pathway specific responses to anticancer compounds in breast cancer
Proceedings of the National Academy of Sciences of the United States of America · 2011
480
cited
A multimodal cell census and atlas of the mammalian primary motor cortex
Nature · 2020
415
cited
Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities
Nature Communications · 2022
313
cited
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Nature · 2021
276
cited
Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics
Nature Communications · 2020
261
cited
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia
Science Advances · 2020
261
cited
Temporal dissection of tumorigenesis in primary cancers.
Cancer Discovery · 2011
251
cited
Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution
Cell Reports · 2018
248
cited
Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution.
Cell Stem Cell · 2017
189
cited
Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics
Nature Communications · 2021
185
cited
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses
Proceedings of the National Academy of Sciences of the United States of America · 2019
166
cited
Phylogenetic analyses of melanoma reveal complex patterns of metastatic dissemination
Proceedings of the National Academy of Sciences of the United States of America · 2015
160
cited
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