Sotabase

Career

· Herbert and Florence Irving Associate Professor of Cancer Data Research, Columbia University2020–
· Postdoctoral Researcher, Memorial Sloan Kettering Cancer Center2016–2019
· Postdoctoral Researcher, Columbia University2014–2016
· Research Intern, Microsoft Research2014–
· PhD in Bioinformatics, Boston University2010–2014
· MSc in Electrical Engineering, Boston University2009–2010
· BSc in Electrical Engineering, Sharif University of Technology2004–2008

Publications (45)

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment
Cell · 2018
1,557
cited
The Mycobacterium tuberculosis regulatory network and hypoxia
Nature · 2013
423
cited
A gene-environment induced epigenetic program initiates tumorigenesis
Nature · 2021
220
cited
Dissecting the treatment-naive ecosystem of human melanoma brain metastasis
Cell · 2022
148
cited
Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation.
Cell Stem Cell · 2019
116
cited
Dirichlet Process Mixture Model for Correcting Technical Variation in Single-Cell Gene Expression Data
International Conference on Machine Learning · 2016
114
cited
IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus
Journal of Experimental Medicine · 2019
76
cited
Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor–immune hubs
Nature Biotechnology · 2024
45
cited
Bayesian Inference for Single-cell Clustering and Imputing
2017
42
cited
Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens
Nature Genetics · 2023
42
cited
Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy
bioRxiv · 2020
35
cited
The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion
G3: Genes, Genomes, Genetics · 2016
31
cited
Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy.
Cell Reports · 2021
24
cited
Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction
Genome Research · 2014
23
cited
Deep generative modeling of sample-level heterogeneity in single-cell genomics
bioRxiv · 2024
21
cited
Modeling and countering the effects of cosmic radiation using bioengineered human tissues.
Biomaterials · 2023
18
cited
Single-Cell Immune Map of Breast Carcinoma Reveals Diverse Phenotypic States Driven by the Tumor Microenvironment
bioRxiv · 2017
16
cited
A Nonparametric Multi-view Model for Estimating Cell Type-Specific Gene Regulatory Networks
arXiv.org · 2019
14
cited
Learning Modular Structures from Network Data and Node Variables
International Conference on Machine Learning · 2014
13
cited
Notch3 signaling promotes tumor cell adhesion and progression in a murine epithelial ovarian cancer model
PLoS ONE · 2020
12
cited
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Elham Azizi | Researcher Profile | Sotabase | Sotabase