Sotabase

Career

· Assistant Professor, Yale University2019–2021
· Postdoctoral Researcher, Weizmann Institute of Science2013–2015
· Doctor of Philosophy - PhD, Computer Science, University of Amsterdam2008–2013

Publications (51)

Visualizing structure and transitions in high-dimensional biological data
Nature Biotechnology · 2019
981
cited
Distinguishing features of long COVID identified through immune profiling
Nature · 2022
560
cited
Neuroinvasion of SARS-CoV-2 in human and mouse brain
bioRxiv · 2020
559
cited
Genome-wide CRISPR Screens Reveal Host Factors Critical for SARS-CoV-2 Infection
Cell · 2020
451
cited
Exploring single-cell data with deep multitasking neural networks
Nature Methods · 2017
274
cited
A neutrophil activation signature predicts critical illness and mortality in COVID-19
Blood Advances · 2021
270
cited
PD-1 marks dysfunctional regulatory T cells in malignant gliomas.
JCI Insight · 2016
221
cited
Immune dysregulation and autoreactivity correlate with disease severity in SARS-CoV-2-associated multisystem inflammatory syndrome in children
Immunity · 2021
198
cited
Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes
PLoS Biology · 2021
198
cited
Promoter Sequence Determines the Relationship between Expression Level and Noise
PLoS Biology · 2013
140
cited
Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19
Nature Communications · 2020
122
cited
Probing the effect of promoters on noise in gene expression using thousands of designed sequences
Genome Research · 2014
117
cited
Single-cell multiomics reveals persistence of HIV-1 in expanded cytotoxic T cell clones.
Immunity · 2022
113
cited
Transcriptomic and clonal characterization of T cells in the human central nervous system
Science immunology · 2020
108
cited
Noise in gene expression is coupled to growth rate
Genome Research · 2015
92
cited
Circulating markers of angiogenesis and endotheliopathy in COVID-19
Pulmonary Circulation · 2020
91
cited
Neurohormonal Blockade and Clinical Outcomes in Patients With Heart Failure Supported by Left Ventricular Assist Devices.
JAMA cardiology · 2019
68
cited
Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise
Genome Research · 2013
62
cited
Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium
bioRxiv · 2020
61
cited
Genome-wide CRISPR screen reveals host genes that regulate SARS-CoV-2 infection
bioRxiv · 2020
58
cited
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David van Dijk | Researcher Profile | Sotabase | Sotabase