Sotabase

Career

· Assistant Professor, University of Washington2020–
· Senior Postdoctoral Researcher, California Institute of Technology (Caltech)2014–2020
· PhD in Computer Science, University of British Columbia2013–
· Postdoctoral Research Assistant & James Martin Fellow, University of Oxford2012–2014
· MSc in Computer Science & Bioinformatics, Simon Fraser University2007–
· BCS in Computer Science, University of Windsor2005–

Publications (46)

Core Hunter: an algorithm for sampling genetic resources based on multiple genetic measures
BMC Bioinformatics · 2009
152
cited
Effective design principles for leakless strand displacement systems
Proceedings of the National Academy of Sciences of the United States of America · 2018
122
cited
A replica exchange Monte Carlo algorithm for protein folding in the HP model
BMC Bioinformatics · 2007
105
cited
Absolute and arbitrary orientation of single-molecule shapes
Science · 2018
86
cited
Compiler-aided systematic construction of large-scale DNA strand displacement circuits using unpurified components
Nature Communications · 2017
82
cited
Leakless DNA Strand Displacement Systems
DNA · 2015
66
cited
DNA walker circuits: computational potential, design, and verification
Natural Computing · 2013
65
cited
Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands
DNA · 2013
49
cited
A General-Purpose CRN-to-DSD Compiler with Formal Verification, Optimization, and Simulation Capabilities
DNA · 2017
38
cited
Space and Energy Efficient Computation with DNA Strand Displacement Systems
DNA · 2012
33
cited
Less haste, less waste: on recycling and its limits in strand displacement systems
Interface Focus · 2011
25
cited
Probabilistic Model Checking for Biology
Software Systems Safety · 2014
24
cited
An Algorithm for the Energy Barrier Problem Without Pseudoknots and Temporary Arcs
Pacific Symposium on Biocomputing · 2010
21
cited
Fast Algorithmic Self-assembly of Simple Shapes Using Random Agitation
DNA · 2014
21
cited
Verifying Chemical Reaction Network Implementations: A Pathway Decomposition Approach
Theoretical Computer Science · 2014
19
cited
Indexing hypertext
J. Discrete Algorithms · 2013
17
cited
Efficient codon optimization with motif engineering
J. Discrete Algorithms · 2011
15
cited
Leveraging Steric Moieties for Kinetic Control of DNA Strand Displacement Reactions
Journal of the American Chemical Society · 2023
15
cited
The complexity of string partitioning
J. Discrete Algorithms · 2012
14
cited
Thermodynamic Binding Networks
DNA · 2017
14
cited
Sotabase
Chris Thachuk | Researcher Profile | Sotabase | Sotabase