Sotabase

Career

· Assistant Professor, University of Waterloo2013–
· Associate Professor, University Research Chair, Biology Core Facility Director, University of Waterloo2013–
· Postdoctoral Researcher, Stanford University2010–2013
· Ph.D. in Bioinformatics, University of Waterloo2010–
· B.Sc. in Biology, University of Waterloo2005–
· Assistant Professor, U. Waterloo

Publications (120)

AnnoTree: visualization and exploration of a functionally annotated microbial tree of life
bioRxiv · 2018
242
cited
Metabolic flexibility determines human NK cell functional fate in the tumor microenvironment.
Cell Metabolism · 2021
217
cited
Gene expression and in situ protein profiling of candidate SARS-CoV-2 receptors in human airway epithelial cells and lung tissue
European Respiratory Journal · 2020
166
cited
Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production
The ISME Journal · 2014
164
cited
Functional divergence in the Arabidopsis beta-1,3-glucanase gene family inferred by phylogenetic reconstruction of expression states.
Molecular biology and evolution · 2007
162
cited
Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analyses
Microbiome · 2018
161
cited
Identification of a Botulinum Neurotoxin-like Toxin in a Commensal Strain of Enterococcus faecium.
Cell Host and Microbe · 2018
138
cited
High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
The ISME Journal · 2019
125
cited
The Skin Microbiome of Cohabiting Couples
mSystems · 2017
111
cited
Ancient selection for derived alleles at a GDF5 enhancer influencing human growth and osteoarthritis risk
Nature Genetics · 2017
96
cited
Modular evolution and the origins of symmetry: reconstruction of a three-fold symmetric globular protein.
Structure · 2012
93
cited
Botulinum neurotoxin homologs in non‐Clostridium species
FEBS Letters · 2015
92
cited
An assessment of genome annotation coverage across the bacterial tree of life
Microbial Genomics · 2020
91
cited
Ordered surface carbons distinguish antifreeze proteins and their ice-binding regions
Nature Biotechnology · 2006
79
cited
Metagenomic and chemical characterization of soil cobalamin production
The ISME Journal · 2019
78
cited
Prediction of molecular mimicry candidates in human pathogenic bacteria
Virulence · 2013
75
cited
Cold-Active Winter Rye Glucanases with Ice-Binding Capacity12
Plant Physiology · 2006
66
cited
Metagenomic data-mining reveals contrasting microbial populations responsible for trimethylamine formation in human gut and marine ecosystems
Microbial Genomics · 2016
65
cited
Phylogenomics of 8,839 Clostridioides difficile genomes reveals recombination-driven evolution and diversification of toxin A and B
bioRxiv · 2020
65
cited
Unraveling the Zoonotic Origin and Transmission of SARS-CoV-2
Trends in Ecology & Evolution · 2020
65
cited
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Andrew Doxey | Researcher Profile | Sotabase | Sotabase