Sotabase

Career

· Researcher, FAIRsharing project, Oxford e-Research Centre2015–
· Short-term ontology development projects, University of Manchester2012–
· Research Assistant, Newcastle University2006–
· Software Engineer for UniProtKB, European Bioinformatics Institute1999–

Publications (36)

The Ontology for Biomedical Investigations
PLoS ONE · 2016
346
cited
Controlled vocabularies and semantics in systems biology
Molecular Systems Biology · 2011
321
cited
FAIRsharing as a community approach to standards, repositories and policies
Nature Biotechnology · 2019
297
cited
Data Resource Profile: Accessible Resource for Integrated Epigenomic Studies (ARIES).
International Journal of Epidemiology · 2015
282
cited
SBML Level 3: an extensible format for the exchange and reuse of biological models
Molecular Systems Biology · 2020
243
cited
MIREOT: The minimum information to reference an external ontology term
Appl. Ontology · 2009
196
cited
BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences
Database J. Biol. Databases Curation · 2016
101
cited
The First RSBI (ISA-TAB) Workshop: “Can a Simple Format Work for Complex Studies?”
Omics · 2008
97
cited
The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation
Journal of Biomedical Semantics · 2014
96
cited
The FAIR Cookbook - the essential resource for and by FAIR doers
Scientific Data · 2023
53
cited
The OWL of Biomedical Investigations
OWL: Experiences and Directions · 2008
43
cited
Saint: a lightweight integration environment for model annotation
Bioinform. · 2009
25
cited
Annotation of SBML models through rule-based semantic integration
Journal of Biomedical Semantics · 2009
24
cited
“Be sustainable”: EOSC‐Life recommendations for implementation of FAIR principles in life science data handling
EMBO Journal · 2023
18
cited
FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies
bioRxiv · 2018
17
cited
Meeting report: the fourth Genomic Standards Consortium (GSC) workshop.
Omics · 2008
14
cited
Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data
Data Intelligence · 2020
11
cited
Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models
Journal of Integrative Bioinformatics · 2007
11
cited
Live Coverage of Scientific Conferences Using Web Technologies
PLoS Comput. Biol. · 2010
9
cited
Modeling and Managing Experimental Data Using FuGE
Omics · 2009
8
cited
Sotabase
Allyson Lister | Researcher Profile | Sotabase | Sotabase