Tommi Jaakkola | Researcher Profile | Sotabase

Career

· Lead Instructor, MIT Professional Education2024–

· Professor of Electrical Engineering and Computer Science, and the Institute for Data, Systems, and Society, Massachusetts Institute of Technology (MIT)1998–

· Professor, Massachusetts Institute of Technology (MIT) Applied Computing Group1998–

· Faculty member / Professor, MIT1998–

· Professor of Electrical Engineering and Computer Science, MIT1998–

· Professor, Researcher, MIT Computer Science and Artificial Intelligence Laboratory (CSAIL)1998–

· Faculty Member, MIT CSAIL1998–

· Researcher, MIT CSAIL1998–

· Director, MIT Jameel Clinic1998–

· Professor of Electrical Engineering and Computer Science, MIT Massachusetts Institute of Technology

Publications (418)

An Introduction to Variational Methods for Graphical Models

Machine-mediated learning · 1999

4,593

cited

Exploiting Generative Models in Discriminative Classifiers

Neural Information Processing Systems · 1998

1,707

cited

Junction Tree Variational Autoencoder for Molecular Graph Generation

International Conference on Machine Learning · 2018

1,551

cited

Analyzing Learned Molecular Representations for Property Prediction

Journal of Chemical Information and Modeling · 2019

1,548

cited

Maximum-Margin Matrix Factorization

Neural Information Processing Systems · 2004

1,222

cited

A Deep Learning Approach to Antibiotic Discovery

Cell · 2020

1,175

cited

On the Convergence of Stochastic Iterative Dynamic Programming Algorithms

Neural Computation · 1994

1,110

cited

Towards Robust Interpretability with Self-Explaining Neural Networks

Neural Information Processing Systems · 2018

1,072

cited

Weighted Low-Rank Approximations

International Conference on Machine Learning · 2003

863

cited

Rationalizing Neural Predictions

Conference on Empirical Methods in Natural Language Processing · 2016

856

cited

Deep indel mutagenesis reveals the regulatory and modulatory architecture of alternative exon splicing

Nature Communications · 2025

811

cited

Style Transfer from Non-Parallel Text by Cross-Alignment

Neural Information Processing Systems · 2017

809

cited

Convergence Results for Single-Step On-Policy Reinforcement-Learning Algorithms

Machine-mediated learning · 2000

742

cited

Serial Regulation of Transcriptional Regulators in the Yeast Cell Cycle

Cell · 2001

715

cited

MAP estimation via agreement on trees: message-passing and linear programming

IEEE Transactions on Information Theory · 2005

712

cited

Partially labeled classification with Markov random walks

Neural Information Processing Systems · 2001

696

cited

Computational discovery of gene modules and regulatory networks

Nature Biotechnology · 2003

686

cited

Approximate Inference in Additive Factorial HMMs with Application to Energy Disaggregation

International Conference on Artificial Intelligence and Statistics · 2012

669

cited

DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

International Conference on Learning Representations · 2022

650

cited

Bayesian parameter estimation via variational methods

Statistics and computing · 2000

646

cited

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