Sotabase

Career

· Assistant Professor, Harvey Mudd College2024–
· PhD Student Representative, Columbia University2022–2024
· Union Organizer, Student Workers of Columbia (UAW Local 2710)2021–2022
· Founding Organizer, Pre-Submission Application Review Program, Columbia University2020–2021
· Speaker, "Demystifying the Dissertation" Initiative, Columbia University2020–2021
· Founding Organizer, Graduate Student Theory Retreat, Columbia University2019–2021
· PhD Coordinator, Emerging Scholars Program, Columbia University2019–2022
· Elected Member, Phi Beta Kappa, Williams College2017–
· Williams Class of 1960s Scholar in Computer Science, Williams College2017–

Publications (97)

Occurrence of autoantibodies to annexin I, 14-3-3 theta and LAMR1 in prediagnostic lung cancer sera.
Journal of Clinical Oncology · 2008
194
cited
Denoising array-based comparative genomic hybridization data using wavelets.
Biostatistics · 2005
191
cited
Prevalidation of Salivary Biomarkers for Oral Cancer Detection
Cancer Epidemiology, Biomarkers and Prevention · 2012
173
cited
Associations of plasma trimethylamine N-oxide, choline, carnitine, and betaine with inflammatory and cardiometabolic risk biomarkers and the fecal microbiome in the Multiethnic Cohort Adiposity Phenotype Study.
American Journal of Clinical Nutrition · 2020
144
cited
SELDI-TOF MS whole serum proteomic profiling with IMAC surface does not reliably detect prostate cancer.
Clinical Chemistry · 2008
129
cited
Analytical validation of serum proteomic profiling for diagnosis of prostate cancer: sources of sample bias.
Clinical Chemistry · 2008
123
cited
Batch effects removal for microbiome data via conditional quantile regression
Nature Communications · 2022
86
cited
A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS
Bioinform. · 2006
84
cited
Fecal Microbial Diversity and Structure Are Associated with Diet Quality in the Multiethnic Cohort Adiposity Phenotype Study.
Journal of NutriLife · 2019
72
cited
Enterolignan-Producing Phenotypes Are Associated with Increased Gut Microbial Diversity and Altered Composition in Premenopausal Women in the United States
Cancer Epidemiology, Biomarkers and Prevention · 2014
67
cited
Towards microbiome transplant as a therapy for periodontitis: an exploratory study of periodontitis microbial signature contrasted by oral health, caries and edentulism
BMC Oral Health · 2015
67
cited
Circulating bile acids in healthy adults respond differently to a dietary pattern characterized by whole grains, legumes and fruits and vegetables compared to a diet high in refined grains and added sugars: A randomized, controlled, crossover feeding study.
Metabolism: Clinical and Experimental · 2018
63
cited
Multiscale Processing of Mass Spectrometry Data
Biometrics · 2006
62
cited
The clathrin adaptor Dab2 recruits EH domain scaffold proteins to regulate integrin β1 endocytosis
Molecular Biology of the Cell · 2012
58
cited
Scale-based normalization of spectral data
Cancer Biomarkers · 2006
57
cited
The gut microbiome and type 2 diabetes status in the Multiethnic Cohort
PLoS ONE · 2021
52
cited
KERNEL-PENALIZED REGRESSION FOR ANALYSIS OF MICROBIOME DATA.
Annals of Applied Statistics · 2015
48
cited
Comparison of prediction models with radiological semantic features and radiomics in lung cancer diagnosis of the pulmonary nodules: a case-control study
European Radiology · 2019
47
cited
Characterization of the gut microbiome in epidemiologic studies: the multiethnic cohort experience.
Annals of Epidemiology · 2016
45
cited
Annexin A2/TLR2/MYD88 pathway induces arginase 1 expression in tumor-associated neutrophils
Journal of Clinical Investigation · 2022
42
cited
Sotabase