Sotabase

Career

· Honors Student, UC Berkeley2025–
· Graduate Student, Berkeley Artificial Intelligence Research2023–
· Research Assistant, Berkeley Artificial Intelligence Research (BAIR) Lab
· Undergraduate Student, UC Berkeley Electrical Engineering & Computer Sciences (EECS)

Publications (44)

The Energetics and Physiological Impact of Cohesin Extrusion
Cell · 2018
435
cited
Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy
Proceedings of the National Academy of Sciences of the United States of America · 2012
320
cited
De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture
Proceedings of the National Academy of Sciences of the United States of America · 2017
221
cited
Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection
Proceedings of the National Academy of Sciences of the United States of America · 2014
134
cited
Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information
Proceedings of the National Academy of Sciences of the United States of America · 2014
114
cited
Aggregation Effects on the Emission Spectra and Dynamics of Model Oligomers of MEH-PPV
2009
76
cited
Elucidating the druggable interface of protein−protein interactions using fragment docking and coevolutionary analysis
Proceedings of the National Academy of Sciences of the United States of America · 2016
66
cited
Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models.
Journal of Chemical Physics · 2013
64
cited
A mechanistic study of electron transfer from the distal termini of electrode-bound, single-stranded DNAs.
Journal of the American Chemical Society · 2010
56
cited
Connecting the Sequence-Space of Bacterial Signaling Proteins to Phenotypes Using Coevolutionary Landscapes
bioRxiv · 2016
55
cited
Exploring chromosomal structural heterogeneity across multiple cell lines
bioRxiv · 2020
43
cited
Molecular weight effect on the formation of β phase poly(9,9'-dioctylfluorene) in dilute solutions.
Journal of Physical Chemistry B · 2011
35
cited
The length and viscosity dependence of end-to-end collision rates in single-stranded DNA.
Biophysical Journal · 2009
30
cited
The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome
bioRxiv · 2019
30
cited
Failure of one-dimensional Smoluchowski diffusion models to describe the duration of conformational rearrangements in floppy, diffusive molecular systems: a case study of polymer cyclization.
Journal of Chemical Physics · 2011
26
cited
The rate of intramolecular loop formation in DNA and polypeptides: the absence of the diffusion-controlled limit and fractional power-law viscosity dependence.
Journal of Physical Chemistry B · 2009
23
cited
Charge-site-dependent dissociation of hydrogen-rich radical peptide cations upon vacuum UV photoexcitation.
Chemistry · 2012
22
cited
Universality in the timescales of internal loop formation in unfolded proteins and single-stranded oligonucleotides.
Biophysical Journal · 2010
21
cited
A Combined Computational and Genetic Approach Uncovers Network Interactions of the Cyanobacterial Circadian Clock
Journal of Bacteriology · 2016
20
cited
Chain Length and Substituent Effects on the Formation of Excimer-Like States in Nanoaggregates of CN-PPV Model Oligomers
2010
19
cited
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