Sotabase

Career

· Professor, University of Haifa2006–
· Ph.D. Candidate, Stanford University2000–2004
· Visiting Lecturer, Harvard Medical School

Publications (72)

Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.
Journal of Molecular Biology · 2005
314
cited
Small libraries of protein fragments model native protein structures accurately.
Journal of Molecular Biology · 2002
211
cited
Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction.
Current Opinion in Structural Biology · 2006
153
cited
Potential antigenic cross-reactivity between SARS-CoV-2 and Dengue viruses
Clinical Infectious Diseases · 2020
129
cited
Sequence-similar, structure-dissimilar protein pairs in the PDB
Proteins: Structure, Function, and Bioinformatics · 2007
127
cited
FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately
Proceedings of the National Academy of Sciences of the United States of America · 2010
110
cited
On the universe of protein folds.
Annual Review of Biophysics · 2013
88
cited
Inverse Kinematics in Biology: The Protein Loop Closure Problem
Int. J. Robotics Res. · 2005
87
cited
Global view of the protein universe
Proceedings of the National Academy of Sciences of the United States of America · 2014
75
cited
Complex evolutionary footprints revealed in an analysis of reused protein segments of diverse lengths
Proceedings of the National Academy of Sciences of the United States of America · 2017
69
cited
On the emergence of P-Loop NTPase and Rossmann enzymes from a Beta-Alpha-Beta ancestral fragment
bioRxiv · 2020
68
cited
Maps of protein structure space reveal a fundamental relationship between protein structure and function
Proceedings of the National Academy of Sciences of the United States of America · 2011
67
cited
Potential Antigenic Cross-reactivity Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Dengue Viruses
Clinical Infectious Diseases · 2020
65
cited
Bridging Themes: Short Protein Segments Found in Different Architectures
bioRxiv · 2020
49
cited
Using an alignment of fragment strings for comparing protein structures
Bioinform. · 2007
42
cited
Protein decoy assembly using short fragments under geometric constraints
Biopolymers · 2003
37
cited
Evolutionary pathways of repeat protein topology in bacterial outer membrane proteins
eLife · 2018
31
cited
On the evolution of protein–adenine binding
Proceedings of the National Academy of Sciences of the United States of America · 2020
30
cited
CyToStruct: Augmenting the Network Visualization of Cytoscape with the Power of Molecular Viewers.
Structure · 2015
25
cited
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
IEEE/ACM Transactions on Computational Biology & Bioinformatics · 2005
18
cited
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