Sotabase

Career

· Research Analyst, Carnegie Mellon University2009–2015
· Senior Research Programmer, Carnegie Mellon University2008–
· Project Scientist, Carnegie Mellon University

Publications (35)

Cross species analysis of microarray expression data
Bioinform. · 2009
105
cited
The hyperdeterminant and triangulations of the 4-cube
Mathematics of Computation · 2006
72
cited
Short rational functions for toric algebra and applications
Journal of symbolic computation · 2003
67
cited
Kdetrees: Non-parametric Estimation of Phylogenetic Tree Distributions
Bioinform. · 2013
52
cited
Parametric Alignment of Drosophila Genomes
PLoS Comput. Biol. · 2005
51
cited
DECOD: fast and accurate discriminative DNA motif finding
Bioinform. · 2011
50
cited
Detection of radioactive sources in urban scenes using Bayesian Aggregation of data from mobile spectrometers
Information Systems · 2016
41
cited
On the optimality of the neighbor-joining algorithm
Algorithms for Molecular Biology · 2007
41
cited
Reconstruction of composite regulator-target splicing networks from high-throughput transcriptome data
BMC Genomics · 2015
26
cited
iB4e: A Software Framework for Parametrizing Specialized LP Problems
International Congress on Mathematical Software · 2006
21
cited
Toward the Human Genotope
Bulletin of Mathematical Biology · 2007
21
cited
Bayes estimators for phylogenetic reconstruction
Systematic Biology · 2009
17
cited
Three Kinds of Integer Programming Algorithms Based on Barvinok's Rational Functions
Conference on Integer Programming and Combinatorial Optimization · 2004
17
cited
A computational study of integer programming algorithms based on Barvinok's rational functions
Discrete Optimization · 2005
16
cited
First steps toward the geometry of cophylogeny
2008
13
cited
A support vector machine based test for incongruence between sets of trees in tree space
BMC Bioinformatics · 2012
11
cited
Statistical Phylogenetic Tree Analysis Using Differences of Means
Frontiers in Neuroscience · 2010
11
cited
Evaluation of coded aperture radiation detectors using a Bayesian approach
2016
7
cited
Predicting neurological recovery with Canonical Autocorrelation Embeddings
PLoS ONE · 2019
7
cited
Nonparametric Estimation of Phylogenetic Tree Distributions
2013
5
cited
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Peter Huggins | Researcher Profile | Sotabase | Sotabase