Sotabase

Career

· Director, International Computer Science Institute (ICSI)2022–2025
· Fellow, Emerging Leaders in Biosecurity Initiative, Johns Hopkins University2018–
· Staff Scientist, National Center for Biotechnology Information (NCBI), National Institutes of Health (NIH)2009–2013
· Director of U.S. Markets, Airfinity
· Senior Lead Scientist, Booz Allen Hamilton
· PhD in Genetics, Case Western Reserve University
· Adjunct Senior Fellow, Technology and National Security Program, Center for a New American Security (CNAS)
· Defense Advanced Research Projects Agency (DARPA)
· Advisor, EveryCure
· Certificate in Data Science, General Assembly
· Principal Architect and Scientist, Google Cloud Healthcare and Life Sciences, Google
· HHS BARDA
· Certificate in Data Science, MIT
· Master's in Scientific Clinical Investigation (MSCI), Northwestern University
· Building Strategic Alliances, UCSF Quantitative Biosciences Institute
· Presidential Innovation Fellow, White House Presidential Innovation Fellow (PIF)

Publications (21)

NCBI GEO: archive for functional genomics data sets—update
Nucleic Acids Res. · 2012
9,065
cited
Activation of the interferon system by short-interfering RNAs
Nature Cell Biology · 2003
1,504
cited
NCBI GEO: archive for functional genomics data sets—10 years on
Nucleic Acids Res. · 2010
1,250
cited
Functional classification of interferon‐stimulated genes identified using microarrays
Journal of Leukocyte Biology · 2001
935
cited
Annotating the human genome with Disease Ontology
BMC Genomics · 2009
284
cited
Induction of interferon-stimulated gene expression and antiviral responses require protein deacetylase activity.
Proceedings of the National Academy of Sciences of the United States of America · 2004
227
cited
From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations
Bioinform. · 2009
116
cited
Promyelocytic Leukemia Zinc Finger Protein Regulates Interferon-Mediated Innate Immunity
Immunity · 2009
101
cited
Lipid Metabolism Genes in Contralateral Unaffected Breast and Estrogen Receptor Status of Breast Cancer
Cancer Prevention Research · 2013
44
cited
Annotating the human genome with Disease
2009
39
cited
Expression of IFITM1 in chronic myeloid leukemia patients.
Leukemia research : a Forum for Studies on Leukemia and Normal Hemopoiesis · 2005
33
cited
Functional Annotation of IFN-α-Stimulated Gene Expression Profiles from Sensitive and Resistant Renal Cell Carcinoma Cell Lines
2006
15
cited
How Fitbit data are being made available to registered researchers in All of Us Research Program
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2022
10
cited
Fitbit "Bring Your Own Device" data in the All of Us Research Program
American Medical Informatics Association Annual Symposium · 2020
2
cited
Biomedical research in the Cloud: considerations for researchers and organizations moving to (or adding) cloud computing resources.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2022
1
cited
Abstract P2-10-30: Expression of lipid metabolism genes in contralateral unaffected breast associated with estrogen receptor status of breast cancer
2012
Curating Data and Communicating Quality for Impact in a FAIR World
American Medical Informatics Association Annual Symposium · 2020
Differential gene expression associated with estrogen receptor status of breast cancer identified by microarray meta-analysis.
2009
Interferon-induced gene expression profiles and clinical response in renal cell carcinoma.
2006
International Society for Interferon and Cytokine Research: Selected Abstracts from the Annual Meeting, October 26-30, 2003
2004
Sotabase
Michelle Holko | Researcher Profile | Sotabase | Sotabase