Sotabase

Career

· Director Of Data AI, FutureFit AI2025–
· Principal Software Engineer (AI ML), Nava2025–2025
· Senior Applied Scientist, Amazon2022–2025
· Faculty Research Associate, Brown University2017–2019
· Sr. Director Of Research And Technology, Research Improving People's Lives2017–2022
· Director Of Data Science, Brown University2014–2017
· Interim Director Of Scientific Computing, Brown University2014–2014

Publications (92)

Phylogenomic Analyses Support Traditional Relationships within Cnidaria
bioRxiv · 2015
189
cited
Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda
bioRxiv · 2014
176
cited
The mathematical imagery trainer: from embodied interaction to conceptual learning
International Conference on Human Factors in Computing Systems · 2011
139
cited
Agalma: an automated phylogenomics workflow
BMC Bioinformatics · 2013
129
cited
Extreme Scaling of Production Visualization Software on Diverse Architectures
IEEE Computer Graphics and Applications · 2010
108
cited
Parallel I/O, analysis, and visualization of a trillion particle simulation
International Conference for High Performance Computing, Networking, Storage and Analysis · 2012
101
cited
Parallel index and query for large scale data analysis
2011 International Conference for High Performance Computing, Networking, Storage and Analysis (SC) · 2011
91
cited
Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA
Cell Reports Medicine · 2022
82
cited
Tuning HDF5 for Lustre File Systems
2010
72
cited
Hybrid Parallelism for Volume Rendering on Large-, Multi-, and Many-Core Systems
IEEE Transactions on Visualization and Computer Graphics · 2012
62
cited
Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing
Scientific Reports · 2020
61
cited
Parallel I/O performance: From events to ensembles
IEEE International Parallel and Distributed Processing Symposium · 2010
60
cited
MPI-hybrid Parallelism for Volume Rendering on Large, Multi-core Systems
EGPGV@Eurographics · 2010
51
cited
Predicting high-risk opioid prescriptions before they are given
Proceedings of the National Academy of Sciences of the United States of America · 2019
45
cited
Bioinformatic data processing pipelines in support of next‐generation sequencing‐based HIV drug resistance testing: the Winnipeg Consensus
Journal of the International AIDS Society · 2018
43
cited
Multi-Laboratory Comparison of Next-Generation to Sanger-Based Sequencing for HIV-1 Drug Resistance Genotyping
Viruses · 2020
36
cited
A Generalized Framework for Auto-tuning Stencil Computations
2009
34
cited
High-Throughput Compression of FASTQ Data with SeqDB
IEEE/ACM Transactions on Computational Biology & Bioinformatics · 2013
34
cited
Evolution of Gene Expression across Species and Specialized Zooids in Siphonophora
bioRxiv · 2021
28
cited
H5hut: A high-performance I/O library for particle-based simulations
2010 IEEE International Conference On Cluster Computing Workshops and Posters (CLUSTER WORKSHOPS) · 2010
28
cited
Sotabase
Mark Howison | Researcher Profile | Sotabase | Sotabase