Sotabase

Career

· PhD student in Computer Science (Human-Computer Interaction), UC Berkeley2017–

Publications (132)

An accurate and robust imputation method scImpute for single-cell RNA-seq data
Nature Communications · 2018
616
cited
System wide analyses have underestimated protein abundances and the importance of transcription in mammals
PeerJ · 2012
290
cited
Biomarkers of aging
Science China Life Sciences · 2023
245
cited
Exaggerated false positives by popular differential expression methods when analyzing human population samples
Genome Biology · 2022
230
cited
Comparative analysis of regulatory information and circuits across distant species
Nature · 2014
200
cited
Statistics or biology: the zero-inflation controversy about scRNA-seq data
Genome Biology · 2020
195
cited
Benchmarking Computational Doublet-Detection Methods for Single-Cell RNA Sequencing Data.
Cell Systems · 2020
160
cited
Statistics requantitates the central dogma
Science · 2015
153
cited
DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila
Proceedings of the National Academy of Sciences of the United States of America · 2012
150
cited
Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation
Proceedings of the National Academy of Sciences of the United States of America · 2011
139
cited
Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data
Genome Research · 2014
106
cited
Makers' Marks: Physical Markup for Designing and Fabricating Functional Objects
ACM Symposium on User Interface Software and Technology · 2015
106
cited
scDesign2: a transparent simulator that generates high-fidelity single-cell gene expression count data with gene correlations captured
Genome Biology · 2021
99
cited
scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
Nature Biotechnology · 2023
95
cited
A statistical simulator scDesign for rational scRNA-seq experimental design
bioRxiv · 2018
67
cited
Modeling and analysis of RNA-seq data: a review from a statistical perspective
Quantitative Biology · 2018
61
cited
Beyond the Artifact: Power as a Lens for Creativity Support Tools
ACM Symposium on User Interface Software and Technology · 2023
58
cited
Editing Spatial Layouts through Tactile Templates for People with Visual Impairments
International Conference on Human Factors in Computing Systems · 2019
57
cited
TRANSCRIPTOME ANALYSIS USING NEXT-GENERATION SEQUENCING
2015
57
cited
Exploring the Influence of Urban Form on Urban Vibrancy in Shenzhen Based on Mobile Phone Data
Sustainability · 2018
56
cited
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