Sotabase

Career

· Senior Staff Software Engineer, Meta2023–
· Head of Engineering and Product - Observability, Postman2023–
· Founder, Akita Software2018–2023
· Assistant Professor, Carnegie Mellon University2016–2018
· Postdoctoral Researcher, Harvard Medical School2015–2016
· Intern, Facebook, Inc.2012–
· PhD Student, Massachusetts Institute of Technology (MIT)2010–2015
· Research Intern, Microsoft Research2010–
· MS Student, Massachusetts Institute of Technology (MIT)2008–2010
· Undergraduate Student, Harvard University2004–2008
· Akita Software

Publications (128)

Patterns of somatic structural variation in human cancer genomes
Nature · 2020
672
cited
Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2
Cell Metabolism · 2013
389
cited
Secure distributed programming with value-dependent types
Journal of functional programming · 2011
288
cited
A language for automatically enforcing privacy policies
ACM-SIGACT Symposium on Principles of Programming Languages · 2012
188
cited
scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning
Nature Biotechnology · 2022
126
cited
Multi-Omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency
bioRxiv · 2018
122
cited
Strategies to enable large-scale proteomics for reproducible research
Nature Communications · 2020
112
cited
Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development
BMC Genomics · 2017
78
cited
Plasma Levels of TMAO can be Increased with 'Healthy' and 'Unhealthy' Diets and Do Not Correlate with the Extent of Atherosclerosis but with Plaque Instability.
Cardiovascular Research · 2020
77
cited
Identification, Review, and Systematic Cross-Validation of microRNA Prognostic Signatures in Metastatic Melanoma.
Journal of Investigative Dermatology · 2016
73
cited
Precise, dynamic information flow for database-backed applications
ACM-SIGPLAN Symposium on Programming Language Design and Implementation · 2015
72
cited
Core functional nodes and sex-specific pathways in human ischaemic and dilated cardiomyopathy
Nature Communications · 2020
70
cited
Faceted execution of policy-agnostic programs
ACM Workshop on Programming Languages and Analysis for Security · 2013
64
cited
Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis
BMC Bioinformatics · 2019
56
cited
Fluid intake and all-cause mortality, cardiovascular mortality and kidney function: a population-based longitudinal cohort study.
Nephrology, Dialysis and Transplantation · 2014
56
cited
Health-Related Quality of Life in People Across the Spectrum of CKD
Kidney International Reports · 2020
56
cited
Utilizing state‐of‐the‐art “omics” technology and bioinformatics to identify new biological mechanisms and biomarkers for coronary artery disease
Microcirculation · 2018
50
cited
Effect of chronic exercise in healthy young male adults: a metabolomic analysis.
Cardiovascular Research · 2020
49
cited
Biobanking for discovery of novel cardiovascular biomarkers using imaging-quantified disease burden: protocol for the longitudinal, prospective, BioHEART-CT cohort study
BMJ Open · 2019
48
cited
Clonal evolution in liver cancer at single-cell and single-variant resolution
Journal of Hematology & Oncology · 2021
46
cited
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Jean Yang | Researcher Profile | Sotabase | Sotabase