Sotabase

Career

· Research Assistant, Massachusetts Institute of Technology (MIT) Interactive Robotics Group2019–

Publications (75)

The Journal of Open Source Software
2017
270
cited
Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis
Science · 2014
252
cited
Global disparities in SARS-CoV-2 genomic surveillance
Nature Communications · 2022
112
cited
Prognostic Indicators of Life-Threatening Malaria Are Associated with Distinct Parasite Variant Antigen Profiles
Science Translational Medicine · 2012
81
cited
COVID-19 transmission dynamics underlying epidemic waves in Kenya
Science · 2021
80
cited
Optimization of the SARS-CoV-2 ARTIC Network V4 Primers and Whole Genome Sequencing Protocol
Frontiers in Medicine · 2022
75
cited
Toward a global virus genomic surveillance network
Cell Host and Microbe · 2023
67
cited
The utility of Escherichia coli as a contamination indicator for rural drinking water: Evidence from whole genome sequencing
PLoS ONE · 2021
66
cited
Journal of Open Source Software (JOSS): design and first-year review
PeerJ Computer Science · 2017
65
cited
Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya
Nature Communications · 2020
41
cited
Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis
Virus Evolution · 2017
37
cited
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics
Bioinform. · 2012
36
cited
Scalable Workflows and Reproducible Data Analysis for Genomics
Methods in molecular biology · 2019
29
cited
Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant
Scientific Reports · 2019
28
cited
Endemic chikungunya fever in Kenyan children: a prospective cohort study
BMC Infectious Diseases · 2021
21
cited
Evaluating the performance of tools used to call minority variants from whole genome short-read data
Wellcome Open Research · 2018
20
cited
The Plasmodium falciparum Rh5 invasion protein complex reveals an excess of rare variant mutations
Malaria Journal · 2021
20
cited
A pan-African pathogen genomics data sharing platform to support disease outbreaks
Nature Network Boston · 2023
17
cited
Evolutionary Genomics Statistical and Computational Methods Second
16
cited
Characterising paediatric mortality during and after acute illness in Sub-Saharan Africa and South Asia: a secondary analysis of the CHAIN cohort using a machine learning approach
EClinicalMedicine · 2023
15
cited
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Bilha-Catherine “Bilkit” Githinji | Researcher Profile | Sotabase | Sotabase