Sotabase

Career

· Master of Science (S.M.) in Electrical Engineering and Computer Science, MIT2025–
· PhD Student, MIT Computer Science and Artificial Intelligence Laboratory (CSAIL)2021–
· Research Staff / Software Engineer, Martinos Center for Biomedical Imaging, Massachusetts General Hospital2019–
· Bachelor of Science (B.S.) in Neuroscience, Bates College
· Bachelor of Science (B.S.) in Neuroscience, MIT

Publications (42)

SynthStrip: skull-stripping for any brain image
NeuroImage · 2022
361
cited
Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning
IEEE Transactions on Medical Imaging · 2021
251
cited
HyperMorph: Amortized Hyperparameter Learning for Image Registration
Information Processing in Medical Imaging · 2021
160
cited
A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images
NeuroImage · 2021
69
cited
Learning the Effect of Registration Hyperparameters with HyperMorph
The journal of machine learning for biomedical imaging · 2022
52
cited
PSACNN: Pulse sequence adaptive fast whole brain segmentation
NeuroImage · 2019
38
cited
TopoFit: Rapid Reconstruction of Topologically-Correct Cortical Surfaces
International Conference on Medical Imaging with Deep Learning · 2022
33
cited
An open-source tool for longitudinal whole-brain and white matter lesion segmentation
NeuroImage: Clinical · 2022
31
cited
Synthetic data in generalizable, learning-based neuroimaging
Imaging Neuroscience · 2024
27
cited
Anatomy-aware and acquisition-agnostic joint registration with SynthMorph
Imaging Neuroscience · 2023
26
cited
Anatomy-specific acquisition-agnostic affine registration learned from fictitious images
Medical Imaging · 2023
20
cited
A Longitudinal Method for Simultaneous Whole-Brain and Lesion Segmentation in Multiple Sclerosis
MLCN/RNO-AI@MICCAI · 2020
14
cited
Hypernet-Ensemble Learning of Segmentation Probability for Medical Image Segmentation with Ambiguous Labels
arXiv.org · 2021
8
cited
VoxelPrompt: A Vision-Language Agent for Grounded Medical Image Analysis
arXiv.org · 2024
6
cited
MultiMorph: On-Demand Atlas Construction
Computer Vision and Pattern Recognition · 2025
4
cited
AtlasMorph: Learning conditional deformable templates for brain MRI
Medical Image Analysis · 2025
End-to-end Cortical Surface Reconstruction from Clinical Magnetic Resonance Images
MLMI@MICCAI · 2025
PSACNN: Pulse Sequence Resilient Fast Whole Brain Segmentation
2019
Unified Brain Surface and Volume Registration
arXiv.org · 2025
University of Birmingham Learn2Reg
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Andrew Hoopes | Researcher Profile | Sotabase | Sotabase