Sotabase

Career

· Senior Research Associate, TITUS Research GmbH2021–
· Director Competence Center Cognitive Architectures, Technische Universität Berlin / DAI-Labor2014–2021
· Director Competence Centre Agent Core Technologies, Technische Universität Berlin / DAI-Labor2011–2014
· Researcher, DAI-Labor1999–2021
· Dr.-Ing., Informatik, Technische Universität Berlin
· Diplom, Informatik, TU Berlin

Publications (27)

Cell-type deconvolution from DNA methylation: a review of recent applications
Human Molecular Genetics · 2017
167
cited
MethylNet: an automated and modular deep learning approach for DNA methylation analysis
BMC Bioinformatics · 2019
113
cited
Ten quick tips for deep learning in biology
PLoS Comput. Biol. · 2020
30
cited
Comparison of common machine learning models for classification of tuberculosis using transcriptional biomarkers from integrated datasets
Applied Soft Computing · 2019
29
cited
A New Dimension of Breast Cancer Epigenetics - Applications of Variational Autoencoders with DNA Methylation
Bioinformatics · 2018
27
cited
Deconvolution of DNA methylation identifies differentially methylated gene regions on 1p36 across breast cancer subtypes
Scientific Reports · 2017
24
cited
Unsupervised deep learning with variational autoencoders applied to breast tumor genome-wide DNA methylation data with biologic feature extraction
bioRxiv · 2018
23
cited
Elephants and algorithms: a review of the current and future role of AI in elephant monitoring
Journal of the Royal Society Interface · 2023
22
cited
Enrichment of CpG island shore region hypermethylation in epigenetic breast field cancerization
Epigenetics · 2020
21
cited
Genome-scale identification of microRNA-related SNPs associated with risk of head and neck squamous cell carcinoma
Carcinogenesis · 2017
19
cited
MethylSPWNet and MethylCapsNet: Biologically Motivated Organization of DNAm Neural Networks, Inspired by Capsule Networks
npj Systems Biology and Applications · 2021
18
cited
MicroRNA-Related Genetic Variants Associated with Survival of Head and Neck Squamous Cell Carcinoma
Cancer Epidemiology, Biomarkers and Prevention · 2018
16
cited
SIG-DB: Leveraging homomorphic encryption to securely interrogate privately held genomic databases
PLoS Comput. Biol. · 2018
14
cited
Bioacoustic Event Detection with Self-Supervised Contrastive Learning
bioRxiv · 2022
12
cited
PySEAL: A Python wrapper implementation of the SEAL homomorphic encryption library
arXiv.org · 2018
12
cited
methyLiftover: cross-platform DNA methylation data integration
Bioinform. · 2016
10
cited
PyMethylProcess - convenient high-throughput preprocessing workflow for DNA methylation data
Bioinform. · 2019
10
cited
The Promise and Peril of Artificial Intelligence - Violet Teaming Offers a Balanced Path Forward
arXiv.org · 2023
6
cited
Biotechnology in Defense of Economic and National Security
Health Security · 2020
4
cited
Investigating Random Forest Classification on Publicly Available Tuberculosis Data to Uncover Robust Transcriptional Biomarkers
International Conference on Health Informatics · 2018
4
cited
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