Sotabase

Career

· Professor, Fundação Getulio Vargas, Rio de Janeiro (Current)2020–
· Professor, Royal Holloway University of London2006–
· Doctor of Philosophy - PhD, Computer Science, University of Toronto1996–2002
· Master of Science - MS, Computer Science, University of Milan1984–1990

Publications (47)

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
Nature · 2006
3,038
cited
Detecting overlapping protein complexes in protein-protein interaction networks
Nature Methods · 2012
1,213
cited
A large-scale evaluation of computational protein function prediction
Nature Methods · 2013
958
cited
A Census of Human Soluble Protein Complexes
Cell · 2012
833
cited
Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins
PLoS Biology · 2009
399
cited
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
Genome Biology · 2019
391
cited
The Aquila Digital Community The Aquila Digital Community
257
cited
Predicting essential genes in fungal genomes.
Genome Research · 2006
123
cited
mutation3D: Cancer Gene Prediction Through Atomic Clustering of Coding Variants in the Structural Proteome
Human Mutation · 2016
115
cited
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Genome Biology · 2016
112
cited
Predicting the frequencies of drug side effects
Nature Communications · 2020
109
cited
Exploring the evolutionary path of plant MAPK networks.
Trends in Plant Science · 2012
98
cited
Role of miR-2392 in driving SARS-CoV-2 infection
Cell Reports · 2021
70
cited
Machine learning and network medicine approaches for drug repositioning for COVID-19
Patterns · 2021
39
cited
Machine learning prediction of side effects for drugs in clinical trials
Cell Reports Methods · 2022
30
cited
Protein function prediction for newly sequenced organisms
Nature Machine Intelligence · 2021
30
cited
Disease gene prediction for molecularly uncharacterized diseases
PLoS Comput. Biol. · 2019
27
cited
Network modeling of patients' biomolecular profiles for clinical phenotype/outcome prediction
Scientific Reports · 2020
16
cited
Neurogenomic Signatures of Successes and Failures in Life-History Transitions in a Key Insect Pollinator
Genome Biology and Evolution · 2017
15
cited
Unlike Chloroquine, Mefloquine Inhibits SARS-CoV-2 Infection in Physiologically Relevant Cells
bioRxiv · 2021
14
cited
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Alberto Paccanaro | Researcher Profile | Sotabase | Sotabase